Extract reads used for contigs assembly
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2.6 years ago
Clet • 0

Hi all,

Basically I want to realize a plot with all reads from each contigs resulting from my asssembly with the last version of Velvet. To do that I am looking for a script or anything else to parse an AFG file or any other solution to get a file with each contigs of my assembly and all the reads used for the assembly of those contigs.

Best,

assembly sequencing RNA-Seq • 697 views
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Hi, i am challeging with same problem. Can you solve it and how?

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Please move it to a new post with more details and please rephrase the question. Did you try the solution furnished using quast below?

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2.6 years ago
neranjan ▴ 50

how about using quast software to get a analysis report on the assembly http://quast.sourceforge.net/quast

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Thanks neranjan, I will try with

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