Variant allele frequency
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5.3 years ago
sruthi ▴ 40

Can we adjust variant allele frequency in any of the tools like VarScan2, Mutect etc..

next-gen sequencing • 1.6k views
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5.3 years ago
nsmi8446 ▴ 170

Once you have your variant file you can filter variants based on allele frequency:

https://vcftools.github.io/man_latest.html#BASIC%20OPTIONS

See the section on allele filtering. Hope this helps.

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Thank you @nsmi8446. I will check with it.

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Hey! Thanks. It worked.

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