SOLVED: Reading Fasta files into a custom database and either need to write a converter myself, or find one to export the data to CSV. Manually doing the conversion via an free application would be okay, a batch conversion would be better. It would be much better if the options run on Windows XP, but if not OSX/Linux, though all options must be be local, meaning I'm not going to upload the file to the an external system. The process to from install to output needs to be 5-10 to start, and then 10-20 seconds going forward.
Thanks, and if you have any questions, let me know.