Hello I have two questions for this wonderful forum: 1- I have results of snpEff (vcf files) but some of you know the command to generate the statistics from this file, normally snpEff does it when I run it, but I just want the statistics without running the whole program. 2- How can I filter the snpEff results by functionality or effects e.g.: only no synomims Thanks a lot
1)If you are looking for the HTML stats file I guess you will need to run the program completely just don't store the output if you don't need it.
2) There is another program that comes with snpEff called SnpSift, you can use it for filtering and statistical analysis.