Question: How to convert DS value for chrX non-PAR SNPs in male
gravatar for Apprentice
7 weeks ago by
Apprentice20 wrote:


I have imputed male data of SNPs located on chrX non-PAR (pseudo autosomal region) using 1000 genomes phase 3 as a refrence. The imputation was performed by using minimac3.

The imputed genotypes have GT, DS, and GP information. The DS data is ranging from 0 to 1.

In many X-wide association studies, the imputed male genotype is coded ranging from 0 to 2. For example,

Could you tell me how to convert the DS data ranging 0 to 1 into the data ranging 0 to 2?

par chrx snp imputation • 101 views
ADD COMMENTlink modified 7 weeks ago • written 7 weeks ago by Apprentice20
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1815 users visited in the last hour