Entering edit mode
4.2 years ago
sruthi ▴ 40
Hi, I'm new to BWA tool. I indexed my reference.fa using command:
bwa index -a bwtsw reference.fa reference_prefix
and got 3 output files:
I read that the above command must produce 8 output files such as
As only 3 output files have been generated, has the command run successfully? If not what should I do?
bwa indexoutput some messages to the screen, what did they say?
Hey, So the messages displayed are: 1. bwa_index Pack FASTA 2. Construct BWT for the packed sequence 3. BWT_gen 4. Update BWT 5. Pack forward only FASTA 6. Construct SA from BWT and Occ...
What is the reason that you chose
Hey, I chose bwtsw as the genome I'm analysing is of larger size, say 3.3 GB. Hence.