Question: Incomplete peaks in "Per sequence quality scores"
gravatar for kehoe
4 months ago by
kehoe0 wrote:


I am using FastQC from Babraham Bioinformatics to analyze Illumina RNAseq output (fastq.gz).

In the "Per sequence quality scores" of my data I have what looks like incomplete peaks. My samples neither represent the examples given on their site for good or bad data (see examples below) so I am unsure how to interpret them (see samples below).

example_bad: example_good: mySample8_R1: mySample8_R2:

All my data have similar shaped incomplete peaks.

Any insight would be greatly appreciated as this is a new topic for me. Thank you in advance!

fastqc fastqc report • 148 views
ADD COMMENTlink written 4 months ago by kehoe0
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