Question: Incomplete peaks in "Per sequence quality scores"
gravatar for kehoe
15 months ago by
Leibniz Institute for Zoo and Wildlife Research
kehoe0 wrote:


I am using FastQC from Babraham Bioinformatics to analyze Illumina RNAseq output (fastq.gz).

In the "Per sequence quality scores" of my data I have what looks like incomplete peaks. My samples neither represent the examples given on their site for good or bad data (see examples below) so I am unsure how to interpret them (see samples below).

example_bad: example_good: mySample8_R1: mySample8_R2:

All my data have similar shaped incomplete peaks.

Any insight would be greatly appreciated as this is a new topic for me. Thank you in advance!

fastqc fastqc report • 294 views
ADD COMMENTlink written 15 months ago by kehoe0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 804 users visited in the last hour