I am using FastQC from Babraham Bioinformatics to analyze Illumina RNAseq output (fastq.gz).
In the "Per sequence quality scores" of my data I have what looks like incomplete peaks. My samples neither represent the examples given on their site for good or bad data (see examples below) so I am unsure how to interpret them (see samples below).
All my data have similar shaped incomplete peaks.
Any insight would be greatly appreciated as this is a new topic for me. Thank you in advance!