I am having a problem with OMA not being able to read files. The error message is:
**** Reading the all-against-all files... Error, ' unable to ReadProgram(Cache/AllAll/Dimm_proteins_A/Dimm_proteins_A/part_78-177)'
Its no surprise that it can't read it because I checked the Cache and this part has not been created. I am not sure how to deal with this. I am running OMA standalone on a cluster using the queue manager Sun Grid Engine. The job has stalled at this point (all-against all is not complete). The job was submitted like so:
export NR_PROCESSES=100 qsub -t 1-$NR_PROCESSES OMA.sh
The error message is reported in the most recently modified output file. I have read on some other posts that similar errors can be fixed by deleting the part that OMA is having trouble with and relaunching the job but considering this one does not exist at all I am unsure what to do. Would be grateful for any advice available. Please let me know if you need more information to understand the problem.
Many thanks, Nicki