Hi I want to run a package named DawnRank in R. This package has some data requirements and file format. One of these requirements is a mutation file that the rows represent the genes and the columns represent the sample IDs and the mutation for each gene in each samples are binary (0,1) (you could see an example of this file here). I am not very familiar with the TCGA file formats and I couldn't found such data format. Does anyone know how can I find or create this file format?
Thank you for your help.