Question: Redirect output from MIXCR
0
gravatar for jh
18 months ago by
jh30
jh30 wrote:

Hi,

I am including MIXCR in a snakemake pipeline, and would like to know how to redirect the output files to a specified path. I can't seem to find this info in the documentation. https://mixcr.readthedocs.io/en/master/quickstart.html

Does anyone know?

Thanks in advance

rna-seq • 257 views
ADD COMMENTlink modified 5 weeks ago by mrkt0 • written 18 months ago by jh30
0
gravatar for mrkt
5 weeks ago by
mrkt0
mrkt0 wrote:

If your command is: mixcr analyze amplicon -s <species> \ --starting-material <startingmaterial> \ --5-end <5End> --3-end <3End> \ --adapters <adapters> \ [OPTIONS] input_file1 [input_file2] analysis_name

then set analysis_name as path/to/analysis/analysis_name

ADD COMMENTlink written 5 weeks ago by mrkt0
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