average nucleotide identity (ani) of fungi

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5.0 years ago

oussriradnane • 0

Hello everyone how can I use ANI (average nucleotide identity) for eukaryotic genomes (fungi)

alignment genome • 2.4k views

ADD COMMENT • link updated 5.0 years ago by Biostar 20 • written 5.0 years ago by oussriradnane • 0

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What do you mean by "use"? Your question is too vague, please edit it and add more detail.

ADD REPLY • link 5.0 years ago by Ram 43k

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I am trying to calculate ANI between different species of fungi that have a chromrsome number different from one species to another, how can I do thank you

ADD REPLY • link 5.0 years ago by oussriradnane • 0

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can I find software that allows me to calculate ANI between fusarium species

ADD REPLY • link 5.0 years ago by oussriradnane • 0

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Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized. SUBMIT ANSWER is for new answers to original question.

ADD REPLY • link 5.0 years ago by GenoMax 141k

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thank you This is my first time

ADD REPLY • link 5.0 years ago by oussriradnane • 0

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I think you might be able to use GET_HOMOLOGUES to calculate ANI based on BLAST results. I'm not completely sure as I only calculated ANI for bacteria using this software. The program also prints an image and you can configure the layout of the heatmap. Here is the link if you wanna give it a read and investigate whether it fits your purpose: https://github.com/eead-csic-compbio/get_homologues (software), http://eead-csic-compbio.github.io/get_homologues/manual/ (manual).