Question: average nucleotide identity (ani) of fungi
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gravatar for oussriradnane
6 weeks ago by
oussriradnane0 wrote:

Hello everyone how can I use ANI (average nucleotide identity) for eukaryotic genomes (fungi)

alignment genome • 200 views
ADD COMMENTlink modified 15 days ago by Biostar ♦♦ 20 • written 6 weeks ago by oussriradnane0

What do you mean by "use"? Your question is too vague, please edit it and add more detail.

ADD REPLYlink modified 6 weeks ago • written 6 weeks ago by RamRS21k

I am trying to calculate ANI between different species of fungi that have a chromrsome number different from one species to another, how can I do thank you

ADD REPLYlink written 6 weeks ago by oussriradnane0

can I find software that allows me to calculate ANI between fusarium species

ADD REPLYlink written 6 weeks ago by oussriradnane0

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized. SUBMIT ANSWER is for new answers to original question.

ADD REPLYlink written 6 weeks ago by genomax67k

thank you This is my first time

ADD REPLYlink written 6 weeks ago by oussriradnane0

I think you might be able to use GET_HOMOLOGUES to calculate ANI based on BLAST results. I'm not completely sure as I only calculated ANI for bacteria using this software. The program also prints an image and you can configure the layout of the heatmap. Here is the link if you wanna give it a read and investigate whether it fits your purpose: https://github.com/eead-csic-compbio/get_homologues (software), http://eead-csic-compbio.github.io/get_homologues/manual/ (manual).

ADD REPLYlink written 6 weeks ago by Alec Watanabe30

thank you Alec Watanabe

ADD REPLYlink written 5 weeks ago by oussriradnane0
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