Question: IPA - gene list
1
gravatar for user56
10 months ago by
user5620
user5620 wrote:

Hi,

I did analysis in IPA (Ingenuity Pathway Analysis) on RNA-Seq data. I have my pathways but I would like to know what genes are present in particular Canonical Pathway. The ratio says for example 8/240 (8 genes from my dataset, 240 genes for the whole pathway). I am interested in these 240 genes. Where can I find them?

ADD COMMENTlink modified 10 months ago by genomax78k • written 10 months ago by user5620
2
gravatar for Arup Ghosh
10 months ago by
Arup Ghosh2.2k
India
Arup Ghosh2.2k wrote:

Export the pathway data to get the list of genes belonging to a particular pathway form your gene list. To get all the genes related to a pathway just search the pathway name in the top search bar and you will get the complete list.

ADD COMMENTlink written 10 months ago by Arup Ghosh2.2k
1
gravatar for genomax
10 months ago by
genomax78k
United States
genomax78k wrote:

From Summary table of results --> Top Canonical Pathways --> Select Pathway you are interested in --> A new window opens --> Find Open Pathway button to the right under the bar graph --> Pathway opens in a new window --> Under Export (top row of icons) find second button for Export Data --> Select All Molecules (default) --> Save Tab delimited text file by providing a name.

ADD COMMENTlink modified 10 months ago • written 10 months ago by genomax78k
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