Question: How to separate different kinds of RNA in my list of gene
gravatar for Javad
12 days ago by
Javad60 wrote:

Dear all,

I have a normal RNA seq count table with around 40000 rows. In my data I would like to seperate "protein coding", long non-coding", "pseudo gene", "misc" RNA etc. to analyse each one of them separately. (I have the Ensemble ID corresponding to each row). is there a straight forward way to do that? Any suggestion is highly appreciated.

Thanks a lot in advance.

rna-seq • 67 views
ADD COMMENTlink written 12 days ago by Javad60

If you get the Ensembl GTF file from here (or if you already have it) that information is encoded in it. I linked Human file but if you have some other genome then look for that. Information would be under gene_biotype field. gene_id field has the Ensembl identifiers.

ADD REPLYlink modified 12 days ago • written 12 days ago by genomax65k
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