Question: How to separate different kinds of RNA in my list of gene
gravatar for Javad
6 months ago by
Javad60 wrote:

Dear all,

I have a normal RNA seq count table with around 40000 rows. In my data I would like to seperate "protein coding", long non-coding", "pseudo gene", "misc" RNA etc. to analyse each one of them separately. (I have the Ensemble ID corresponding to each row). is there a straight forward way to do that? Any suggestion is highly appreciated.

Thanks a lot in advance.

rna-seq • 136 views
ADD COMMENTlink written 6 months ago by Javad60

If you get the Ensembl GTF file from here (or if you already have it) that information is encoded in it. I linked Human file but if you have some other genome then look for that. Information would be under gene_biotype field. gene_id field has the Ensembl identifiers.

ADD REPLYlink modified 6 months ago • written 6 months ago by genomax73k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 778 users visited in the last hour