How to separate different kinds of RNA in my list of gene
0
0
Entering edit mode
5.0 years ago
Javad ▴ 150

Dear all,

I have a normal RNA seq count table with around 40000 rows. In my data I would like to seperate "protein coding", long non-coding", "pseudo gene", "misc" RNA etc. to analyse each one of them separately. (I have the Ensemble ID corresponding to each row). is there a straight forward way to do that? Any suggestion is highly appreciated.

Thanks a lot in advance.

RNA-Seq • 584 views
ADD COMMENT
1
Entering edit mode

If you get the Ensembl GTF file from here (or if you already have it) that information is encoded in it. I linked Human file but if you have some other genome then look for that. Information would be under gene_biotype field. gene_id field has the Ensembl identifiers.

ADD REPLY

Login before adding your answer.

Traffic: 1825 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6