PLINK2 and data split by chromosomes
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5.0 years ago
bigfoot ▴ 10

I have my data in .pgen .bim .fam format split by chromosomes. Could I run all chromosomes at the same time in Plink2 or do I need to merge them in single .pgen .bim .fam files before?

plink gwas prs genome SNP • 2.1k views
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