Question: The following object is masked from package:base
1
gravatar for fatimarasool135
10 days ago by
fatimarasool13520 wrote:

Hi

I have installed the ballgown package for differential gene expression.

Now I called the library of the installed packages for differential gene expression. but I encountered the following errors (masked) while calling the libraries. Can you tell me how to solve these masked objects from the packages?

the called library as 

library(ballgown)

Attaching package: ‘ballgown’

The following object is masked from ‘package:base’:

    structure

library(RSkittleBrewer)
library(genefilter)
library(dplyr)

Attaching package: ‘dplyr’

The following objects are masked from ‘package:ballgown’:

    contains, expr, last

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

library(devtools)
rna-seq R software error • 94 views
ADD COMMENTlink modified 10 days ago by zx87547.1k • written 10 days ago by fatimarasool13520
3
gravatar for ATpoint
10 days ago by
ATpoint15k
Germany
ATpoint15k wrote:

To be safe, you can always specify from which package a function is to be used, e.g. ballgown::expr like package::function

ADD COMMENTlink written 10 days ago by ATpoint15k
3
gravatar for zx8754
10 days ago by
zx87547.1k
London
zx87547.1k wrote:

conflicts() is a useful function to see function names that are present in multiple loaded packages, to be implicit which functions we use we can do packageName::functionName(). Relevant SO post:

ADD COMMENTlink written 10 days ago by zx87547.1k
2
gravatar for WouterDeCoster
10 days ago by
Belgium
WouterDeCoster38k wrote:

Those messages are not errors and are completely normal. It just tells you that multiple packages which are loaded on your system use overlapping function names.

ADD COMMENTlink written 10 days ago by WouterDeCoster38k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1775 users visited in the last hour