Question: comparative genomics of eukaryotes
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gravatar for oussriradnane
9 days ago by
oussriradnane0 wrote:

hi how can I do a genome comparative analysis of eukaryotic microorganisms. protocol, software .... can I compare chromosome by chromosome or all of the chromosomes at once

alignment genome • 100 views
ADD COMMENTlink written 9 days ago by oussriradnane0
1

Question unclear, please elaborate. Specify which data you have and what exactly you aim to achieve. Make sure your question is not too broad, be as specific as possible.

ADD REPLYlink written 9 days ago by WouterDeCoster38k

I want to do a genome comparative study of a fungus, but the species have a different number of chromosomes, so how can I do

ADD REPLYlink written 9 days ago by oussriradnane0

I assume you have sequence data for these chromosomes? You could start by using an aligner like LASTZ that can try to align chromosome sized sequences (http://www.bx.psu.edu/~rsharris/lastz/README.lastz-1.04.00.html ).

ADD REPLYlink written 8 days ago by genomax65k

thank you

ADD REPLYlink written 8 days ago by oussriradnane0
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