Question about shotgun Metagenomic

Question

[haddadfatiha62]

hello everybody! I would ask you about the tools that I can use for analyse the data of shotgun metagenomic, and also i would if we can use the tools that we use for analyse the 16 RNA amplicon like : Mothur or Qiime. I hope that you answer me , and thanks

[haddadfatiha62]

THANK YOU ,for your answer

Answer 1

[lagartija]

Hi, qiime works, I don't know about Mothur. You can also use kraken, kaiju, MG-RAST. It depends on what do you whant to do !