Question: How to Simulate RNA-Seq data with allelic bias
0
gravatar for Giovanni Quinones Valdez
10 weeks ago by
UCLA

Hello everyone,

I am trying to simulate RNA-Seq reads to test some software. I want some of the genes to exhibit allele-specific expression, meaning to have one gene allele expressed more than the other. Is there a software that does such simulations?

Thanks,

PD. Also, if anyone knows of any software that also simulates RNA editing sites it would be great.

rna-seq next-gen simulation • 140 views
ADD COMMENTlink written 10 weeks ago by Giovanni Quinones Valdez0

If you're familiar with R this could be of value: http://www.bioconductor.org/packages/release/bioc/html/polyester.html

ADD REPLYlink written 10 weeks ago by nsmi8446120
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