Problem installing bamtools
1
0
Entering edit mode
2.6 years ago
eennadi • 0

I am stuck trying to install bamtools.

when i run make it returns the following

[  0%] Built target SharedHeaders
[  0%] Built target AlgorithmsHeaders
[  0%] Built target APIHeaders
[  1%] Building CXX object api/CMakeFiles/BamTools.dir/BamAlignment.o
/home/emmanuel/bamtools/src/api/BamAlignment.cpp:10:30: fatal error: api/BamAlignment.h: No such file or directory
 #include "api/BamAlignment.h"
                              ^
compilation terminated.
make[2]: *** [api/CMakeFiles/BamTools.dir/BamAlignment.o] Error 1
make[1]: *** [api/CMakeFiles/BamTools.dir/all] Error 2
make: *** [all] Error 2

Please anyone with suggestion on how to solve this problem?

Thanks

bamtools bioinformatics • 1.1k views
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3
Entering edit mode

Not really enough information to give you any help. How are you installing it? What OS are you running? It also hasn't been updated in a year and a half. Is there any reason you aren't just using htslib/samtools (which are extremely well supported and easier to install)? Do you actually need the C++ API or are you just using the command line utilities?

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3
Entering edit mode
2.6 years ago
JC 12k

use bioconda

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