Question: gene IDs enrichment in plants
0
gravatar for Morteza Hadizadeh
13 months ago by
Physiology Research Center, Institute of Basic and Clinical Physiology Sciences, Kerman University of Medical Sciences, Kerman, Iran
Morteza Hadizadeh20 wrote:

Hi every one,

Some databases such as DAVID, BioDBnet or Panther cannot convert or enriched most of plant gene IDs or microarray spot ID, could you please introduce me a package for identifying enrichment a list of genes in plants. Any suggestions?

Thanks a lot.

R • 268 views
ADD COMMENTlink modified 13 months ago by Buffo1.8k • written 13 months ago by Morteza Hadizadeh20

What sort of data do you want to carry out an enrichment on? Also what plant are you working with, is it a model or a non-model?

ADD REPLYlink written 13 months ago by Biogeek380

Apologies for the delay in replying, I would appreciate your immediate attention to this matter. Our data is gene IDs or spot IDs that obtained from microarray analysis, these IDs do not convert to gene symbol, on the other do not enrich by these databases. Our plant is tobacco, this is not a model.

ADD REPLYlink written 13 months ago by Morteza Hadizadeh20
1
gravatar for Buffo
13 months ago by
Buffo1.8k
Buffo1.8k wrote:

Webgestalt includes plants such as a. thaliana

ADD COMMENTlink written 13 months ago by Buffo1.8k

Apologies for the delay in replying. Thank you for valuable guide and introducing the site. Our studied genes related to the tobacco plant, unfortunately, this database does not contain tobacco (in "Organism of Interest" section). If I insert genes that belong to tobacco and set "Organism of Interest" section on thaliana, are the results valid?

ADD REPLYlink modified 13 months ago • written 13 months ago by Morteza Hadizadeh20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1356 users visited in the last hour