Assembler for only nanopore data
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2.6 years ago
ringourquia ▴ 20

Hi Everyone! Does anyone know about an assembler where the input is ONLY nanopore data (i.e, no Illumina or any other kind of short reads)? What about using ABySS for assembling only nanopore reads, is it OK? (I know that SPAdes should not be used if I have only nanopore reads)

Thanks a lot!

genomics Assembly ONT Abyss • 1.7k views
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Have a look here you will probably find what you want.

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2.6 years ago
Dave Carlson ▴ 640

I believe Canu is a popular option. Should work for either nanopore or PacBio long read data.

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Thanks a lot Dave! I will check it out

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2.6 years ago
harish ▴ 370

You can try Canu, Flye, Necat, Minimap-miniasm, Ra etc.

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