Question: How do I extract out ITS region from assembled whole genome sequence of a fungi?
1
gravatar for mrj
18 months ago by
mrj20
mrj20 wrote:

Hi, I am trying to make a computational identification of a whole genome fungal sequence. At the moment, I have a fungal whole genome sequence (300 contigs - fasta sequences). I am thinking of extracting out only the full ITS region. I am wondering what tool I can use to do this and an acceptable protocol to follow.

Thank you

alignment assembly genome • 388 views
ADD COMMENTlink modified 18 months ago • written 18 months ago by mrj20
1

Found this but never used : https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12073

ADD REPLYlink written 18 months ago by Bastien Hervé4.8k

Thank you so much. I will try this.

ADD REPLYlink written 18 months ago by mrj20
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