Question: How do I extract out ITS region from assembled whole genome sequence of a fungi?
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gravatar for mrj
5 weeks ago by
mrj0
mrj0 wrote:

Hi, I am trying to make a computational identification of a whole genome fungal sequence. At the moment, I have a fungal whole genome sequence (300 contigs - fasta sequences). I am thinking of extracting out only the full ITS region. I am wondering what tool I can use to do this and an acceptable protocol to follow.

Thank you

alignment assembly genome • 85 views
ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by mrj0
1

Found this but never used : https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12073

ADD REPLYlink written 5 weeks ago by Bastien Hervé4.2k

Thank you so much. I will try this.

ADD REPLYlink written 5 weeks ago by mrj0
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