Hi all! I am trying to get ChIP-seq peaks from ENCODE ChIP-seq data. The particular experiment I am interested in is GSM613815. When I download the .bed files from GEO, however, I get a lines that look like this:
chr1 9859 10058 SOLEXA5_123:3:23:15452:1914
Unfortunately, this does not have scores, names, strands, etc according to the .bed file format, like so:
chr1 91852645 91853203 SRX005383.05_peak_1 612 . 17.40168 67.74557 61.27857 379
How would I use the information in the first file to get peaks I can use (second line)? Is it a conversion or do I have to do anything else?