I was installing repeatsmasker and it apparently seems to work because it shows "Congratulations! RepeatMasker is now ready to use." But when I run it it reports "Can't locate Text/Soundex.pm...". so I installed the module by "sudo cpan Text::Soundex", and by the end it tells me "Text::Soundex is up to date (3.05)." It seems the module is already installed, but RepeatMasker still has the same problem, as I'll show you in this code:
fragua@picci:~/RM/RepeatMasker$ sudo cpan Text::Soundex Loading internal null logger. Install Log::Log4perl for logging messages Reading '/home/fragua/.cpan/Metadata' Database was generated on Fri, 19 Apr 2019 22:17:03 GMT Text::Soundex is up to date (3.05). fragua@picci:~/RM/RepeatMasker$ ./RepeatMasker -s -lib /home/fragua/RepeatScout-1.0.5/ObiINK5k_repeats_filtered1.fasta /home/fragua/Documenti/Workdirectory/ObiINC5k.fa Can't locate Text/Soundex.pm in @INC (you may need to install the Text::Soundex module) (@INC contains: /home/fragua/RM/RepeatMasker /home/fragua/perl5/lib/perl5 /home/fragua/anaconda/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/fragua/anaconda/lib/site_perl/5.26.2 /home/fragua/anaconda/lib/5.26.2/x86_64-linux-thread-multi /home/fragua/anaconda/lib/5.26.2 .) at /home/fragua/RM/RepeatMasker/Taxonomy.pm line 80. BEGIN failed--compilation aborted at /home/fragua/RM/RepeatMasker/Taxonomy.pm line 80. Compilation failed in require at ./RepeatMasker line 310. BEGIN failed--compilation aborted at ./RepeatMasker line 310.
I installed RepeatMasker in another computer without problems, but I don't know why now I encontered this problem