Question: HISAT2 "error: Encountered internal HISAT2 exception (#1)"
gravatar for
13 months ago by
zhu.ge0 wrote:

Having some issue run hisat2. Keep getting error message.

hisat2 -x ../yeast/yeast -U mini.fq -S mini.sam

Could not locate a HISAT2 index corresponding to basename "../yeast/yeast" Error: Encountered internal HISAT2 exception (#1) Command: /usr/local/bin/hisat2-align-s --wrapper basic-0 -x ../yeast/yeast -S mini.sam -U mini.fq (ERR): hisat2-align exited with value 1

hisat2 hisat • 1.4k views
ADD COMMENTlink written 13 months ago by zhu.ge0

Looks like you have not made the necessary index to use with HISAT2.

ADD REPLYlink modified 13 months ago • written 13 months ago by genomax83k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1793 users visited in the last hour