Question: HISAT2 "error: Encountered internal HISAT2 exception (#1)"
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gravatar for zhu.ge
13 months ago by
zhu.ge0
zhu.ge0 wrote:

Having some issue run hisat2. Keep getting error message.

hisat2 -x ../yeast/yeast -U mini.fq -S mini.sam

Could not locate a HISAT2 index corresponding to basename "../yeast/yeast" Error: Encountered internal HISAT2 exception (#1) Command: /usr/local/bin/hisat2-align-s --wrapper basic-0 -x ../yeast/yeast -S mini.sam -U mini.fq (ERR): hisat2-align exited with value 1

hisat2 hisat • 1.4k views
ADD COMMENTlink written 13 months ago by zhu.ge0

Looks like you have not made the necessary index to use with HISAT2.

ADD REPLYlink modified 13 months ago • written 13 months ago by genomax83k
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