I am using gffread software, for obtaining fasta sequence from gtf file,
gffread -w transcripts.fa -g /path/to/reference_genome/genome.fa 'input/transcript.gtf
but I am facing an error
'free(): invalid next size (normal)' 'Aborted (core dumped)'
Although the output file 'transcripts.fa' is being created, the output file 'transcripts.fa' seems incomplete. I think the problem is with regarding memory allocation, but since I do not have the script of the gffread software and also I can't find multi-threading option in gffread software, therefore I can't fix it.
What can be the solution to fix this problem
Any help in this regard is deeply appreciated.
Thank you in advance.