Question: Gene Set Enrichment Analysis
gravatar for sana777munquad
17 months ago by
sana777munquad0 wrote:

In gene set enrichment analysis, I found many pathways but am unable to differentiate which pathway involve in cancer. So anyone can suggest me?

gsea • 401 views
ADD COMMENTlink written 17 months ago by sana777munquad0

Please confirm the following:

  • the exact program that you used ('Gene Set Enrichment Analysis' can be interpreted, generally, as gene enrichment, and also as the program developed by the Broad Institute of Harvard and MIT)
  • the input that you used for GSEA
  • the output that you have obtained (paste a sample of the output - we cannot see your screen from here)
ADD REPLYlink modified 17 months ago • written 17 months ago by Kevin Blighe65k

I concur with what Kevin wrote -- your question lacks details in order to help you precisely, but given that you seem interested in disease enrichment, you may find the DOSE package useful, which focuses on disease-related ontologies.

ADD REPLYlink written 17 months ago by Friederike6.2k
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