Question: Gene Set Enrichment Analysis
gravatar for sana777munquad
12 weeks ago by
sana777munquad0 wrote:

In gene set enrichment analysis, I found many pathways but am unable to differentiate which pathway involve in cancer. So anyone can suggest me?

gsea • 145 views
ADD COMMENTlink written 12 weeks ago by sana777munquad0

Please confirm the following:

  • the exact program that you used ('Gene Set Enrichment Analysis' can be interpreted, generally, as gene enrichment, and also as the program developed by the Broad Institute of Harvard and MIT)
  • the input that you used for GSEA
  • the output that you have obtained (paste a sample of the output - we cannot see your screen from here)
ADD REPLYlink modified 12 weeks ago • written 12 weeks ago by Kevin Blighe45k

I concur with what Kevin wrote -- your question lacks details in order to help you precisely, but given that you seem interested in disease enrichment, you may find the DOSE package useful, which focuses on disease-related ontologies.

ADD REPLYlink written 12 weeks ago by Friederike4.5k
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