Question: (Closed) Convert gff.gz file to gtf
gravatar for akh5405
11 months ago by
akh54050 wrote:

Hi I am graduate student and want to convert a file downloaded from NCBI ncbi-genomes-2019-04-24/GCF_000697945.2_Focc_2.1_genomic.gff.gz to gtf file. I have tried the gff read file name -T -o My.gtf. It did not work. I need to complete my home assignment, please tell me how to convert the gff.gz file to the gtf file. I shall be really thankful to you

rna-seq gff gtf • 634 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 11 months ago by akh54050
gunzip GCF_000697945.2_Focc_2.1_genomic.gff.gz
ADD REPLYlink modified 11 months ago • written 11 months ago by Kevin Blighe56k

You'd be well served by reading about the file formats here. In general, GTF is a subset of GFF, but GFF has different spec versions as well.

If your GFF is actually a GFF3 file, this answer may be helpful.

ADD REPLYlink written 11 months ago by jared.andrews075.3k

Hello akh5405!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.


ADD REPLYlink written 10 months ago by ATpoint31k
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