Question: (Closed) Convert gff.gz file to gtf
0
gravatar for akh5405
25 days ago by
akh54050
akh54050 wrote:

Hi I am graduate student and want to convert a file downloaded from NCBI ncbi-genomes-2019-04-24/GCF_000697945.2_Focc_2.1_genomic.gff.gz to gtf file. I have tried the gff read file name -T -o My.gtf. It did not work. I need to complete my home assignment, please tell me how to convert the gff.gz file to the gtf file. I shall be really thankful to you

rna-seq gff gtf • 149 views
ADD COMMENTlink modified 15 days ago by Biostar ♦♦ 20 • written 25 days ago by akh54050
2
gunzip GCF_000697945.2_Focc_2.1_genomic.gff.gz
ADD REPLYlink modified 25 days ago • written 25 days ago by Kevin Blighe42k
2

You'd be well served by reading about the file formats here. In general, GTF is a subset of GFF, but GFF has different spec versions as well.

If your GFF is actually a GFF3 file, this answer may be helpful.

ADD REPLYlink written 25 days ago by jared.andrews072.3k

Hello akh5405!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

ADD REPLYlink written 14 days ago by ATpoint16k
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1193 users visited in the last hour