Question: How to make clusters in heat map using ggplot2?
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gravatar for John
11 months ago by
John210
United States
John210 wrote:

Hey there,

How can I cluster the heat map using ggplot2? I know already ggplot2 doesn't contain clustering, but is there any way to do that?

and which is the best and easy package to plot heatmap in R? (should have color key, clustering)

rna-seq R • 2.4k views
ADD COMMENTlink written 11 months ago by John210
1

From @Kevin: A: How can I generate Heat Map with dendograms, and PCA analysis in "R Programming"

ADD REPLYlink written 11 months ago by genomax80k
1

I used heatmap2 with good outcomes. I think this is the actual tutorial I used:

https://combine-australia.github.io/RNAseq-R/06-rnaseq-day1.html

ADD REPLYlink written 11 months ago by curious250
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