Question: How to make clusters in heat map using ggplot2?
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gravatar for Jon
4 months ago by
Jon110
United States
Jon110 wrote:

Hey there,

How can I cluster the heat map using ggplot2? I know already ggplot2 doesn't contain clustering, but is there any way to do that?

and which is the best and easy package to plot heatmap in R? (should have color key, clustering)

rna-seq R • 720 views
ADD COMMENTlink written 4 months ago by Jon110
1

From @Kevin: A: How can I generate Heat Map with dendograms, and PCA analysis in "R Programming"

ADD REPLYlink written 4 months ago by genomax71k
1

I used heatmap2 with good outcomes. I think this is the actual tutorial I used:

https://combine-australia.github.io/RNAseq-R/06-rnaseq-day1.html

ADD REPLYlink written 4 months ago by brett.vanderwerff140
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