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5.0 years ago
fabbri.marco
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10
I have a list of ref-seq genes and I would like to get genome coordinates of all non-overlapping and non-replicated exons for each gene. I am designing a gene panel to detect mutations and I want to be sure to have all exons covered. Any suggestion, how to proceed? thank you Marco
is that a sizeable list you are talking about? is it from a single species or multiple?
what I'm kinda steering at is can't you simply extract that data from the refseq genome annotation files?
In this RefSeq genome annotation file, for example for IL9R we have different exons in different transcripts, some are shared and some unique. I would like to have a single line per gene with the union of exon coordinates:
results:
..
starting file:
thanks
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