convert entrez ID to miRNA

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5.0 years ago

mahaamhamid • 0

hi , i have data of microRNA and have preformed alignment usinh HISAT2 and differentially expression using DEseq2 . the result is in tabular form that contains entrez gene ID. i am confused, shouldn't my result contains miRNA id. if no than than how to convert entrez id to miRNA thanks

sequencing RNA-Seq next-gen • 1.1k views

ADD COMMENT • link 5.0 years ago by mahaamhamid • 0

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Which tool you are using for Quantification?

ADD REPLY • link 5.0 years ago by k.kathirvel93 ▴ 300

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data of microRNA and have preformed alignment usinh HISAT2

That is a strange combination. With microRNA people generally use an aligner that does ungapped alignments.

If you can show examples of ID's you have we can look at getting them converted.

ADD REPLY • link 5.0 years ago by GenoMax 141k

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Why don't you try STAR and FeatureCounts then DESEQ2 ?

ADD REPLY • link 5.0 years ago by k.kathirvel93 ▴ 300

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