Question: Variants in Exon or Intron
0
gravatar for zakkaknadine
20 months ago by
zakkaknadine10
zakkaknadine10 wrote:

After getting the variants using gatk pipeline, how can I know if the variant is in an exon or intron?

intron variant exon • 432 views
ADD COMMENTlink modified 20 months ago by shawn.w.foley1.2k • written 20 months ago by zakkaknadine10
1

search this site for 'functional annotation vcf'

ADD REPLYlink written 20 months ago by Pierre Lindenbaum133k
0
gravatar for shawn.w.foley
20 months ago by
shawn.w.foley1.2k
USA
shawn.w.foley1.2k wrote:

Look into snpEff, it'll classify SNPs based on location, effect on the protein (if they're in exons) and the potential for them to be low, medium, or highly disruptive.

ADD COMMENTlink written 20 months ago by shawn.w.foley1.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2222 users visited in the last hour
_