Question: MaSuRCA error: can't find 'gatekeeper' program
0
gravatar for cristamont1995
16 days ago by
cristamont19950 wrote:

Hi, im using MaSuRCA assembler and when I try to generate the assemble.sh shell script it says that runCA failed because "can't find 'gatekeeper' program":

/opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA config.txt
================================================================================

runCA failed.

----------------------------------------
Stack trace:

 at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 1121.
    main::caFailure('can\'t find \'gatekeeper\' program in /opt/bioinf/MaSuRCA-3.2...', undef) called at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 795
    main::setParameters() called at /opt/bioinf/MaSuRCA-3.2.2/global-1/CA/bin/runCA line 5314

----------------------------------------
Failure message:

can't find 'gatekeeper' program in /opt/bioinf/MaSuRCA-3.2.2/global-1/Linux-amd64/bin.  Possibly incomplete installation

Would you help me to get through this error please

assembly • 101 views
ADD COMMENTlink modified 16 days ago • written 16 days ago by cristamont19950

Relevant part of the error message (Always read the error message carefully):

can't find 'gatekeeper' program in /opt/bioinf/MaSuRCA-3.2.2/global-1/Linux-amd64/bin.  Possibly incomplete installation
  
ADD REPLYlink written 16 days ago by RamRS21k

Thanks! Actually I did it, but I don't know how to solve it. I already google it and still can't do it. If you have any idea please tell me

ADD REPLYlink modified 16 days ago • written 16 days ago by cristamont19950

You may have to reinstall the package since your current installation may be incomplete.

Can you show us what you get if you do ls -lh /opt/bioinf/MaSuRCA-3.2.2/global-1/Linux-amd64/bin/gatekeeper?

ADD REPLYlink written 16 days ago by genomax67k

It says "No such file or directory"

ADD REPLYlink written 16 days ago by cristamont19950
1

It looks like the error message is correct and your install must be incomplete. If this was something you installed then do the install over. If an admin did the install let them know about the error message and ask them to correct.

ADD REPLYlink written 16 days ago by genomax67k
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