i have two bam file (normal.bam and tumor.bam )
i run CNVkit(tool) to find out copy number. After i ran i have get to know tumor purity and ploidy are important factor to uncover Copy number.
Thus, i find the tool for identify purity and ploidy, "ABSOLUTE", and ran it.
But i can't find the document of interpretation of output.
- In this plot i don't know the dot means
- Which one is representative purity of tumor(y-axis) ?????