Question: Kmergenie query: can paired-end and mate-pair reads be used together for input?
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soniabedi.07 • 10 wrote:
Hi Everyone,
I am planning to use Kmergenie for Kmer estimation for de novo assembly of eukaryotic genome of size 1Gb. I have Paired end library and mate pair library of three different insert sizes. I wanted to know, if I should use paired end and MP library as input together or should I carry out Kmer estimation separately for each library.
I intent using AbySS or SOAPdenovo2 for assembly.
Thanks for you help.
Sonia