Question: Illumina file interpretation ATCG to AB
gravatar for MichaelTrev
20 months ago by
MichaelTrev10 wrote:

I have a file for example:

SNP    TOP1&2    AB1&2

SNP1      GG       BB 
SNP2      CC       AA
SNP3      GG       BB 
SNP6      AC       AB   
SNP7      CC       BB
SNP8      AA       AA

Can someone explain me why first CC is AA in AB format, and another CC is BB? If I understand correctly, it is about the preceding and the following SNPs? Is there a map somewhere available? Or could someone write this to me, to check if I am translating correctly TOP1 TOP2 translators on AB1 AB2?

atgc illumina ab • 378 views
ADD COMMENTlink modified 18 months ago by Biostar ♦♦ 20 • written 20 months ago by MichaelTrev10
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