Question: In which step should plink be used?
0
gravatar for felipead66
12 months ago by
felipead6650
felipead6650 wrote:

I have read some papers that use plink in their studies for snps. I also have read plinks' documentation. I have not, though, figured out WHEN to use the plink in the process for snp identification.

Could you please give some advice on when to use plink?

plink snps • 256 views
ADD COMMENTlink modified 12 months ago by WouterDeCoster43k • written 12 months ago by felipead6650

What do you mean by "sap identification"?

ADD REPLYlink written 12 months ago by Fabio Marroni2.5k

typo, the correct is "snp identification"

ADD REPLYlink modified 12 months ago • written 12 months ago by felipead6650
1
gravatar for WouterDeCoster
12 months ago by
Belgium
WouterDeCoster43k wrote:

Plink is used after the SNPs have been called using variant calling tools such as GATK, for statistical analysis such as association testing or Hardy Weinberg equilibrium, among many more things.

ADD COMMENTlink written 12 months ago by WouterDeCoster43k
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