Question: In which step should plink be used?
gravatar for felipead66
7 days ago by
felipead6630 wrote:

I have read some papers that use plink in their studies for snps. I also have read plinks' documentation. I have not, though, figured out WHEN to use the plink in the process for snp identification.

Could you please give some advice on when to use plink?

plink snps • 76 views
ADD COMMENTlink modified 6 days ago by WouterDeCoster39k • written 7 days ago by felipead6630

What do you mean by "sap identification"?

ADD REPLYlink written 7 days ago by Fabio Marroni2.2k

typo, the correct is "snp identification"

ADD REPLYlink modified 7 days ago • written 7 days ago by felipead6630
gravatar for WouterDeCoster
7 days ago by
WouterDeCoster39k wrote:

Plink is used after the SNPs have been called using variant calling tools such as GATK, for statistical analysis such as association testing or Hardy Weinberg equilibrium, among many more things.

ADD COMMENTlink written 7 days ago by WouterDeCoster39k
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