Question: Which R packages are fit for calculating distances and make phylogenetic trees from VCF files?
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gravatar for rimgubaev
12 months ago by
rimgubaev180
Russia/Moscow/Skoltech
rimgubaev180 wrote:

Hello everyone! Please suggest some R packages for calculating distances and make phylogenetic trees from VCF files. I am searching for package with clear manual/tutorial and broad number of methods to calculate genetic distances and tree building, bootstrapping. Thank you.

ADD COMMENTlink written 12 months ago by rimgubaev180
1

Maybe this tutorial can help, there is a hcl tree produced somewhere in the middle.

ADD REPLYlink written 12 months ago by Benn8.0k
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