Which R packages are fit for calculating distances and make phylogenetic trees from VCF files?
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2.5 years ago
rimgubaev ▴ 270

Hello everyone! Please suggest some R packages for calculating distances and make phylogenetic trees from VCF files. I am searching for package with clear manual/tutorial and broad number of methods to calculate genetic distances and tree building, bootstrapping. Thank you.

VCF RNA-Seq Phylogeny populational genetics trees • 1.2k views
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Maybe this tutorial can help, there is a hcl tree produced somewhere in the middle.

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