After hybrid Unicycler assembly, I've received 3 contigs
1 (4.35 Mb) - Alcaligenes faecalis genome, circular (via Geneious) 2 (43.5 kb) - plasmid?, circular (via Geneious) 3 (11 kb) - ?
how can I be sure that contigs 2&3 stands for plasmids? or maybe single plasmid divided into 2 contigs? I've tried to use PlasmidFinder, however its limited for Enterobacteriaceae.