Question: plasmid recovery from hybrid assembly
gravatar for piotr.majewski
10 days ago by
piotr.majewski0 wrote:

Dear All,

After hybrid Unicycler assembly, I've received 3 contigs

1 (4.35 Mb) - Alcaligenes faecalis genome, circular (via Geneious) 2 (43.5 kb) - plasmid?, circular (via Geneious) 3 (11 kb) - ?

how can I be sure that contigs 2&3 stands for plasmids? or maybe single plasmid divided into 2 contigs? I've tried to use PlasmidFinder, however its limited for Enterobacteriaceae.

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