Question: Does Mauve tool work?
0
gravatar for DanielC
6 days ago by
DanielC80
Canada
DanielC80 wrote:

Dear Friends,

I have been trying to use Mauve "http://darlinglab.org/mauve/mauve.html". It seems to be showing erros such as, not loading gbk annotations for some files, and not displaying annotations in the "feature" section? I would really appreciate your comments on this and if you know of a better tool alternative to mauve.

thanks,

mauve gene • 60 views
ADD COMMENTlink written 6 days ago by DanielC80

What is it you want to use it for exactly? Just as a viewer?

Most people use Mauve for contig reordering in my experience.

ADD REPLYlink written 6 days ago by jrj.healey12k

To view mostly, but i think we can manually curate gene annotations there rt? but , it seems to show such errors I mentioned.

ADD REPLYlink modified 6 days ago • written 6 days ago by DanielC80

I don't think mauve is meant to be used as a curation tool.

ADD REPLYlink modified 6 days ago • written 6 days ago by genomax67k

You may be right - though I've never known anyone to use Mauve for such a purpose.

Have you tried a 'proper' genome viewer, something like IGV or Artemis instead?

ADD REPLYlink written 6 days ago by jrj.healey12k
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