Hi, I have a vcf file of somatic variants from Varscan2. I tried annotating it with Variant Effect Predictor and snpEff. The online version of VEP gives an empty output. snpEff takes too long to run, more than 6 hrs. Can anybody suggest an alternative tool for annotating Varscan vcf ? Is there any way I can convert the vcf to a format acceptable by VEP or snpEFF?