Hello, is there anyone who install soapdenovo2 on UBUNTU18.04?
I want to use this program, but I cannot make this source.
I downloaded it from both https://github.com/aquaskyline/SOAPdenovo2, https://sourceforge.net/projects/soapdenovo2/.
Then decompress file and make.
make[1]: Leaving directory '/home/yisoo/Downloads/SOAPdenovo2-src-r240/standardPregraph'
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam_import.o): relocation R_X86_64_32 against.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(sam.o): relocation R_X86_64_32 against .rodata.str1.8' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam_pileup.o): relocation R_X86_64_32 against.rodata.str1.8' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(faidx.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(knetfile.o): relocation R_X86_64_32 against.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(sam_header.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(bgzf.o): relocation R_X86_64_32 against.rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(kstring.o): relocation R_X86_64_32 against .text' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(bam_aux.o): relocation R_X86_64_32S against.rodata' can not be used when making a PIE object; recompile with -fPIC
/usr/bin/ld: ./sparsePregraph/inc/libbam.a(razf.o): relocation R_X86_64_32 against .rodata.str1.1' can not be used when making a PIE object; recompile with -fPIC
standardPregraph/main.o: In functionmain':
main.c:(.text.startup+0xfa): undefined reference to `call_pregraph_sparse'
/usr/bin/ld: final link failed: Symbol needs debug section which does not exist
collect2: error: ld returned 1 exit status
Makefile:65: recipe for target 'SOAPdenovo-63mer' failed
make: * [SOAPdenovo-63mer] Error 1
I always receive this error.
Do you have any idea to solve it?
Please help me.
