Dear bedtools users,
Hope everything is well with you
I want to use multicov mode to get reads count on my chip seq reads
according to beedtools documentation site I've sorted and then indexed the bam file
bedtools multicov [OPTIONS] -bams BAM1 BAM2 BAM3 ... BAMn -bed <BED/GFF/VCF>
but i don't understand what does the bed file refer to ??
anybody who can help me, please?
thanks in advance