Question: Error: err: option file. add space around the equal sign?.
0
gravatar for dudka
26 days ago by
dudka0
dudka0 wrote:

I keep getting this error while trying to run codeml on my alignment:

Error: err: option file. add space around the equal sign?.

I thought it was about the length of the directory but I shorted it a lot and the error is still popping out.

Does anybody know where is this coming from?

Thanks!

codeml software error • 84 views
ADD COMMENTlink modified 26 days ago by RamRS21k • written 26 days ago by dudka0
1

It suggests it may be in your options file. Please share your input files and your exact command. There isn't enough information in your post at the moment.

I don't know CodeML that well myself, but I'd infer from that error that you have an options file which is supposed to look something like

option1 = xxx
option2 = yyy
option3 = zzz

but yours probably looks something like

option1=xxx
option2= yyy
option3 =zzz

And it expects the = sign to be surrounded by whitespace.

ADD REPLYlink modified 26 days ago • written 26 days ago by jrj.healey12k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1363 users visited in the last hour