I am interested in doing pathway analysis on my protein expression data but I am not sure from where should I being. I did study some basics and understood the science behind it but now I have protein expression data from arrays which I used LIMMA package to process. Now I want to do pathway analysis for which I need some guidance. I was thinking of using GSEA for which I think gene expression data (gene annotation and all) is required but again I have protein expression data ( phosphorylated proteins after stimulus) so I'm kind of confused, lost and not sure what to do. What i would like to see is which pathway my deferentially expressed proteins belong to and how they might be interacting with eachother or which pathway they probably are activating.
Question: Protein-protein interaction pathway analysis
9 months ago by
rida.rehman • 0
rida.rehman • 0 wrote:
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