Help with converting BAM to VCF
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4.9 years ago

Hi everyone,

I'm a student and first-time user of Galaxy. I am trying to perform some variant calling from a BAM file, i.e. creating a VCF, using the FreeBayes tool in Galaxy. But this is taking a long time, running for going on 14 hours...

Is this normal? I am not sure if I should delete and restart? Are the servers being overloaded?

Any help would be great.

Thanks

next-gen • 1.5k views
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Hi ricky.truong,

please post the question over at https://help.galaxyproject.org/ as this is the official support platform.

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