I'm aligning Paired-end data using
bowtie2 aligner and got this error:
Error, fewer reads in file specified with -2 than in file specified with -1 terminate called after throwing an instance of 'int' Aborted (core dumped) (ERR): bowtie2-align exited with value 134
bowtie2, by default there's an option if mates are not paired it will search for unpaired mate's alignment to reference genome which isn't working in my case !!!