Question: About TCGA breast cancer HER2 status
0
gravatar for Dylan Wang
8 months ago by
Dylan Wang40
Harbin
Dylan Wang40 wrote:

I have already downloaded the TCGA-BRCA clinical data. I want to divide the tumor sample using HER2 status. But I do not know which item represents the HER2 status? There are a lot of items (contain "HER2" keyword) such as:

lab_proc_her2_neu_immunohistochemistry_receptor_status

lab_procedure_her2_neu_in_situ_hybrid_outcome_type

...

Thanks Dong

rna-seq • 368 views
ADD COMMENTlink modified 8 months ago • written 8 months ago by Dylan Wang40
0
gravatar for Kevin Blighe
8 months ago by
Kevin Blighe54k
Kevin Blighe54k wrote:

There should be one called her2_status_by_ihc.

See my other posts:

Another related thread:

Finally, if you take the CDE ID from the clinical data, you can easily search for TCGA clinical terms to see more descriptive information via the CDE Browser:

her2

Kevin

ADD COMMENTlink modified 8 months ago • written 8 months ago by Kevin Blighe54k
1

Thank you! I got it.

ADD REPLYlink written 8 months ago by Dylan Wang40
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