Question: smartpca doesn't work: number of populations too large.
gravatar for oi.bioinf
12 weeks ago by
oi.bioinf0 wrote:

Hi all,

I am running PCA for controlling populations structure in GWAS. I am providing files pedind, pedsnp and bed. smartpca shows this message which I don't quite follow: "number of populations too large. Increase maxpops if you wish fatalx: (makeeglist) You really want to analyse more than 100 populations? Aborted"

I don't have that many populations...I was able to run smartpca before with the same setup. I just added a couple of other samples to my dataset, and now it doesn't work anymore. Any suggestions?

Thanks in advance!

ADD COMMENTlink modified 7 weeks ago by Biostar ♦♦ 20 • written 12 weeks ago by oi.bioinf0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 772 users visited in the last hour