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3.7 years ago

dz2353
▴
120

Hi, there

I downloaded RSEM expected_count data of TCGA TARGET GTEX from UCSC Xena to perform differential expressed analysis. I noticed the unit is log2(x+1), but I failed to turn the data into integers. The input of DESeq2 should be a matrix with integers. Any suggestions? Thanks in advance!

Best,

Issac

Yep, I did (2^x)-1 but the result is not an integer format cause the scale. I will round them. Thanks a lot!